ot Namespace Reference

Simple class to manage async data transfer in the ODA class. More...

Classes
class	AsyncExchangeContex
class	Block
class	DA
class	Key
struct	LoopCounter
	: Simple structure to keep the loop counters More...
class	MatRecord
class	Mesh
class	Node
struct	NodeTuple
class	SearchKey
class	subDA
	subDA based on the DA, where to perform computations sub domain of the main domain. More...
class	SubScatterMap
class	TreeNode
	A class to manage octants. More...

Enumerations
enum	BlockType {   UNSPECIFIED =0, INTRNL_INDEPENDENT, INTRNL_DEPENDENT, FULLY_INDEPENDENT,   FULLY_DEPENDENT }
	Block type UNSPECIFIED : block flag type is not set INTRNL_INDEPENDENT: Block internal is independent from ghost nodes INTRNL_DEPENDENT: Block internal is dependent from ghost nodes FULLY_INDEPENDENT : Denotes that the all the block element nodal including padding regions are independent from ghost nodes. FULLY_DEPENDENT: Denotes that all the block element nodal including padding region is depend on the ghost nodes.
enum	SM_TYPE { FDM = 0, FEM_CG, FEM_DG, E2E_ONLY }
	type of the scatter map, based on numerical computation method
enum	EType { INDEPENDENT, W_DEPENDENT, UNKWON }
enum	DAType { OCT, PETSC }
	: DA type OCT: uses Dendro DA and PETSC uses petsc based DA
enum	MVECType { MESH_BASED, MESH_FREE }
	: denotes the type of the matvec being computed, MESH_BASED - denotes the MatVec computation using mesh data structures. MESH_FREE - denotes the MatVec computation without using mesh data structures.

Functions
template<>
void	Mesh::init< WaveletDA::LoopType ::ALL > ()
template<>
void	Mesh::init< WaveletDA::INDEPENDENT > ()
template<>
void	Mesh::init< WaveletDA::DEPENDENT > ()
template<>
bool	Mesh::nextAvailable< WaveletDA::ALL > ()
template<>
bool	Mesh::nextAvailable< WaveletDA::INDEPENDENT > ()
template<>
bool	Mesh::nextAvailable< WaveletDA::DEPENDENT > ()
template<>
void	Mesh::next< WaveletDA::ALL > ()
template<>
void	Mesh::next< WaveletDA::INDEPENDENT > ()
template<>
void	Mesh::next< WaveletDA::DEPENDENT > ()
void	computeODAFlags (const ot::Mesh *pMesh, std::vector< unsigned int > &flagList)
	flag the elements for the ODA construction More...
void	computeLocalToGlobalNodalMap (const ot::Mesh *pMesh, std::vector< DendroIntL > &map, DendroIntL &globalNodeSz)
	computes the local to global nodal map. More...
std::ostream &	operator<< (std::ostream &os, TreeNode const &node)
int	mergeOctrees (std::vector< TreeNode > &inOct1, std::vector< TreeNode > &inOct2, std::vector< TreeNode > &outOct, MPI_Comm comm)
int	refineOctree (const std::vector< ot::TreeNode > &inp, std::vector< ot::TreeNode > &out)
int	refineAndPartitionOctree (const std::vector< ot::TreeNode > &inp, std::vector< ot::TreeNode > &out, MPI_Comm comm)
int	createRegularOctree (std::vector< ot::TreeNode > &out, unsigned int lev, unsigned int dim, unsigned int maxDepth, MPI_Comm comm)
int	lineariseList (std::vector< ot::TreeNode > &list, bool skipLast)
int	lineariseList (std::vector< ot::TreeNode > &list, MPI_Comm comm)
bool	lessThanUsingWts (TreeNode const &a, TreeNode const &b)
unsigned int	getNodeWeight (const TreeNode *t)
bool	bPartComparator (TreeNode a, TreeNode b)
TreeNode	getNCA (TreeNode first, TreeNode second)
int	readPtsFromFile (char *filename, std::vector< double > &pts)
	Reads a list of points from a file. More...
int	readDataPtsFromFile (char *filename, std::vector< double > &pts, std::vector< double > &ptVals)
int	writePtsToFile (char *filename, std::vector< double > &pts)
int	writeDataPtsToFile (char *filename, std::vector< double > &pts, std::vector< double > &data)
int	readNodesFromFile_binary (char *filename, std::vector< TreeNode > &nodes)
int	readNodesFromFile (char *filename, std::vector< TreeNode > &nodes)
int	writeNodesToFile_binary (char *filename, const std::vector< TreeNode > &nodes)
int	writeNodesToFile (char *filename, const std::vector< TreeNode > &nodes)
bool	areComparable (TreeNode first, TreeNode second)
int	int2str (int n, char *s)
char	int2char (int d)
void	addBoundaryNodesType2 (std::vector< ot::TreeNode > &in, std::vector< ot::TreeNode > &bdy, unsigned int dim, unsigned int maxDepth)
void	markBoundaryNodesAtAllLevels (std::vector< ot::TreeNode > &finestOctree, unsigned int nlevels, std::vector< ot::TreeNode > *coarserOctrees, unsigned int maxDepth)
void	discardExtraBoundaryOctants (std::vector< ot::TreeNode > &in, unsigned int dim, unsigned int maxDepth)
void	markHangingNodesAtAllLevels (std::vector< ot::TreeNode > &finestOctree, unsigned int nlevels, std::vector< ot::TreeNode > *coarserOctrees, MPI_Comm *activeComms, unsigned int dim, unsigned int maxDepth)
void	addBoundaryNodesType1 (std::vector< ot::TreeNode > &in, std::vector< ot::TreeNode > &bdy, unsigned int dim, unsigned int maxDepth)
void	flagNodesType1 (std::vector< ot::TreeNode > &in, MPI_Comm comm)
void	flagNodesType2 (std::vector< ot::TreeNode > &in, MPI_Comm comm)
void	flagNodesType3 (std::vector< ot::TreeNode > &in, MPI_Comm comm)

Detailed Description

Simple class to manage async data transfer in the ODA class.

Contains the test utilities for the mesh class.

contains ODA utility functions,

class derived from the TreeNode for scatter map computations.

contains treenode based search keys.

contains utilitity functions of mesh based distributed array(da)

Author

Milinda Fernando School of Computing, University of Utah.

Milinda Fernando School of Computing, University of Utah

Milinda Fernando, School of Computing, University of Utah

Function Documentation

computeLocalToGlobalNodalMap()

void ot::computeLocalToGlobalNodalMap	(	const ot::Mesh *	pMesh,
		std::vector< DendroIntL > &	map,
		DendroIntL &	globalNodeSz
	)

computes the local to global nodal map.

Parameters

[in]	pMesh	ot::Mesh generated form 2:1 balanced octree
[out]	map	constructed local to global nodal map.

computeODAFlags()

void ot::computeODAFlags	(	const ot::Mesh *	pMesh,
		std::vector< unsigned int > &	flagList
	)

flag the elements for the ODA construction

contains ODA utility functions,

Parameters

[in]	pMesh	: ot::Mesh
[out]	flagList	flaged output

Author

Milinda Fernando, School of Computing, University of Utah

readPtsFromFile()

int ot::readPtsFromFile	(	char *	filename,
		std::vector< double > &	pts
	)

Reads a list of points from a file.

Author

Rahul Sampath

Parameters

filename	the file name
pts	the points